Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_845Glycosyl transferases group 1 family protein. (390 aa)    
Predicted Functional Partners:
LO55_1349
EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase family protein.
 
 
 0.912
LO55_846
Glycosyl transferases group 1 family protein.
 
    
0.865
LO55_1333
O-Antigen ligase family protein.
 
 
 0.863
LO55_848
wecB: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.848
LO55_847
NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.833
LO55_1317
Polysaccharide biosynthesis/export family protein.
 
 
 0.832
LO55_1319
pepcterm_ChnLen: polysaccharide chain length determinant, PEP-CTERM locus subfamily protein.
 
 
 0.822
LO55_1342
Polysaccharide biosynthesis family protein.
 
 
 0.822
LO55_1337
Hypothetical protein.
 
     0.797
LO55_3035
Alpha amylase, catalytic domain protein.
   
 0.796
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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