STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_848wecB: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (361 aa)    
Predicted Functional Partners:
LO55_847
NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
 0.999
LO55_2438
Glycosyl transferase 4 family protein.
 
 
 0.948
LO55_2102
Glycosyl transferase 4 family protein.
 
 
 0.946
rfbB
dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.945
LO55_846
Glycosyl transferases group 1 family protein.
 
 
 0.884
LO55_5128
wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family protein; Belongs to the glycosyltransferase 26 family.
 
  
 0.871
LO55_1335
Aminotransferase class I and II family protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.863
LO55_253
Beta-eliminating lyase family protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.863
LO55_4618
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
 
 0.854
LO55_845
Glycosyl transferases group 1 family protein.
  
 
 0.851
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.