Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_849Glycosyl hydrolases 15 family protein. (608 aa)    
Predicted Functional Partners:
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
  
 0.974
LO55_851
Glycosyltransferase 20 family protein.
 
  
 0.960
LO55_4180
Glycosyltransferase 20 family protein.
 
  
 0.834
LO55_4179
Glycosyltransferase 20 family protein.
 
  
 0.826
ggpS
gluc_glyc_Psyn: glucosylglycerol-phosphate synthase.
 
  
 0.812
LO55_3035
Alpha amylase, catalytic domain protein.
  
 
 0.574
LO55_852
Hypothetical protein.
       0.519
LO55_845
Glycosyl transferases group 1 family protein.
    
 0.505
LO55_846
Glycosyl transferases group 1 family protein.
    
 0.505
LO55_3573
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family.
  
 
 0.440
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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