Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
otsBTrehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. (262 aa)    
Predicted Functional Partners:
LO55_851
Glycosyltransferase 20 family protein.
 
 0.999
ggpS
gluc_glyc_Psyn: glucosylglycerol-phosphate synthase.
 
 0.996
LO55_4180
Glycosyltransferase 20 family protein.
 
 0.994
LO55_4179
Glycosyltransferase 20 family protein.
 
 
 0.989
LO55_849
Glycosyl hydrolases 15 family protein.
 
  
 0.974
LO55_3035
Alpha amylase, catalytic domain protein.
  
 0.905
LO55_1745
Glycosyl hydrolases 15 family protein.
 
  
 0.883
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.835
sodC
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
  
 0.772
LO55_2223
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
  
 0.747
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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