STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_86UTRA domain protein. (252 aa)    
Predicted Functional Partners:
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.846
LO55_2894
AAA domain protein.
   
    0.797
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.713
LO55_4300
Helix-turn-helix family protein.
  
  
 0.710
LO55_78
Putative N-acetylglucosamine kinase.
 
     0.636
LO55_87
Bacterial PH domain protein.
       0.628
LO55_3706
Bacterial extracellular solute-binding family protein.
 
 
   0.618
LO55_84
Putative membrane protein.
       0.610
LO55_85
Hypothetical protein.
       0.610
LO55_3819
Bacterial regulatory s, gntR family protein.
  
  
 0.609
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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