STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_866Bcct: transporter, betaine/carnitine/choline transporter family protein; Belongs to the BCCT transporter (TC 2.A.15) family. (505 aa)    
Predicted Functional Partners:
agcS
agcS: amino acid carrier family protein.
 
     0.514
LO55_1627
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein.
 
   
 0.462
LO55_3310
Hypothetical protein.
 
     0.452
LO55_2803
FAD dependent oxidoreductase family protein.
  
  
 0.445
LO55_868
Helix-turn-helix domain protein.
       0.428
LO55_1625
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein.
 
   
 0.418
LO55_590
Ring hydroxylating alpha subunit family protein.
  
  
 0.417
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.