Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_869Glycosyl hydrolase family 20, catalytic domain protein. (800 aa)    
Predicted Functional Partners:
LO55_867
Major Facilitator Superfamily protein.
       0.773
hutH
hutH: histidine ammonia-lyase.
   
    0.745
LO55_81
Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein.
    
 0.735
LO55_4400
GDSL-like Lipase/Acylhydrolase family protein.
    
 0.700
LO55_78
Putative N-acetylglucosamine kinase.
 
     0.670
LO55_3646
Glycosyl hydrolases 2 family protein; Belongs to the glycosyl hydrolase 2 family.
 
 0.635
LO55_870
tonB-Xanth-Caul: TonB-dependent receptor family protein.
       0.623
LO55_3318
Glycosyl hydrolases 2 family protein.
 
 0.562
LO55_3306
Alpha-galactosidase domain protein.
  
  
 0.515
LO55_1489
Rhodanese-like domain protein.
  
    0.504
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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