Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_874Beta-lactamase family protein. (391 aa)    
Predicted Functional Partners:
LO55_81
Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein.
 
 0.984
LO55_4400
GDSL-like Lipase/Acylhydrolase family protein.
  
 
 0.851
LO55_4204
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein.
 
 
 0.841
LO55_1518
N-acetylmuramoyl-L-alanine amidase family protein.
   
 0.826
exoP
Exo-1,3/1,4-beta-glucanase; Belongs to the glycosyl hydrolase 3 family.
  
 
 0.817
LO55_2027
igA Peptidase M64 family protein.
  
 
 0.817
LO55_455
badF/BadG/BcrA/BcrD ATPase family protein.
 
    0.797
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling.
 
    0.737
LO55_1517
badF/BadG/BcrA/BcrD ATPase family protein.
 
    0.728
LO55_78
Putative N-acetylglucosamine kinase.
 
    0.693
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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