STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_874Beta-lactamase family protein. (391 aa)    
Predicted Functional Partners:
LO55_81
Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein.
 
 0.990
LO55_4204
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein.
 
 
 0.901
LO55_4400
GDSL-like Lipase/Acylhydrolase family protein.
  
 
 0.900
exoP
Exo-1,3/1,4-beta-glucanase; Belongs to the glycosyl hydrolase 3 family.
 
 
 0.886
LO55_2027
igA Peptidase M64 family protein.
  
 
 0.886
LO55_1518
N-acetylmuramoyl-L-alanine amidase family protein.
   
 0.822
LO55_455
badF/BadG/BcrA/BcrD ATPase family protein.
 
    0.809
LO55_1517
badF/BadG/BcrA/BcrD ATPase family protein.
 
    0.744
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
 0.743
LO55_78
Putative N-acetylglucosamine kinase.
 
    0.711
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.