Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_875Oxido_grp_1: luciferase oxidoreductase, group 1 family protein. (328 aa)    
Predicted Functional Partners:
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.758
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
    
  0.699
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
  0.680
LO55_3339
Flavodoxin family protein.
     
 0.656
ssuE
FMN_reduc_SsuE: FMN reductase.
 
 0.564
LO55_874
Beta-lactamase family protein.
       0.536
LO55_3027
GGDEF: diguanylate cyclase domain protein.
  
 
 0.516
LO55_2984
NADPH-dependent FMN reductase family protein.
  
 0.499
arsH
resist_ArsH: arsenical resistance protein ArsH.
  
 0.499
LO55_2053
Bacterial extracellular solute-binding s, 3 family protein.
  
 
 0.485
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.