Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LO55_876Outer membrane efflux family protein. (418 aa)    
Predicted Functional Partners:
LO55_878
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  0.918
LO55_4944
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.841
LO55_3845
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 0.822
LO55_2349
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 0.818
LO55_877
ABC transporter family protein.
   
   0.818
LO55_2877
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 0.815
LO55_4129
RND_mfp: efflux transporter, RND family, MFP subunit.
  
 0.783
LO55_4943
acrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
 0.779
LO55_2203
type_I_hlyD: type I secretion membrane fusion, HlyD family protein.
  
 0.761
LO55_1843
type_I_sec_TolC: type I secretion outer membrane, TolC family protein.
  
  
 
0.757
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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