Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_884Isochorismatase family protein. (197 aa)    
Predicted Functional Partners:
atzF
Allophanate_hyd: allophanate hydrolase.
 
  
 0.874
uca
Urea_carbox: urea carboxylase.
    
  0.824
LO55_2883
asp/Glu/Hydantoin racemase family protein.
 
 
 0.810
LO55_816
FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family protein.
 
 
  0.782
LO55_2884
Alpha/beta hydrolase family protein.
  
 0.746
LO55_2886
Isochorismatase family protein.
  
     0.668
LO55_1751
Endoribonuclease L-PSP family protein.
 
 
 0.661
gpsA
Ketopantoate reductase PanE/ApbA family protein; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
   0.646
LO55_3441
Endoribonuclease L-PSP family protein.
  
 
 0.613
LO55_523
Short chain dehydrogenase family protein.
    
  0.609
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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