STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_888Hypothetical protein. (260 aa)    
Predicted Functional Partners:
LO55_3035
Alpha amylase, catalytic domain protein.
  
 
 0.948
LO55_889
Putative lipoprotein.
       0.773
LO55_1156
Glycosyltransferase 36 associated family protein.
    
 0.719
LO55_3942
Glycosyl transferases group 1 family protein.
     
 0.675
LO55_887
Hypothetical protein.
       0.631
LO55_2302
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein.
    
 0.622
LO55_890
Hypothetical protein.
  
    0.589
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
    
 0.578
galU
galU: UTP--glucose-1-phosphate uridylyltransferase.
     
 0.573
amy1.2
Alpha-amylase type B isozyme.
  
 
 0.568
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.