STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_89Short chain dehydrogenase family protein. (263 aa)    
Predicted Functional Partners:
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.916
LO55_1548
Glutamine amidotransferases class-II family protein.
     
 0.772
LO55_4011
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.765
LO55_1188
Short chain dehydrogenase family protein.
  
     0.653
LO55_694
Short chain dehydrogenase family protein.
  
 
  0.638
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
  
 0.615
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
  
 0.607
LO55_3861
Ankyrin repeat family protein.
    
  0.589
LO55_4230
Ankyrin repeat family protein.
    
  0.589
LO55_4764
Acyl transferase domain protein.
 
 0.583
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.