Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_902Hypothetical protein. (167 aa)    
Predicted Functional Partners:
LO55_4592
Phasin: phasin family domain protein.
  
     0.687
LO55_901
GAF domain protein.
       0.542
LO55_1691
Hypothetical protein.
  
     0.541
LO55_2773
Putative exported signal peptide protein.
  
     0.514
LO55_4453
Hypothetical protein.
  
     0.508
LO55_2355
Hypothetical protein.
  
     0.480
LO55_3002
NYN domain protein.
  
     0.466
LO55_3548
Hypothetical protein.
  
     0.463
LO55_339
Etoposide-induced 2.4 family protein.
  
     0.461
LO55_600
Putative membrane protein.
  
     0.459
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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