STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_92Hypothetical protein. (116 aa)    
Predicted Functional Partners:
gshA-2
gshA_ferroox: glutamate--cysteine ligase.
  
     0.732
sdhD
Succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein.
  
     0.691
LO55_2385
Phasin: phasin family domain protein.
  
     0.686
LO55_2044
Hypothetical protein.
  
     0.682
LO55_934
Hypothetical protein.
  
     0.637
LO55_4343
Hypothetical protein.
  
     0.622
LO55_2975
Hypothetical protein.
  
     0.621
LO55_1896
Zinc-finger domain protein.
  
     0.590
sdhC
succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit.
  
     0.574
LO55_1054
resB-like family protein.
  
     0.552
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.