Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
LO55_92Hypothetical protein. (116 aa)    
Predicted Functional Partners:
gshA-2
gshA_ferroox: glutamate--cysteine ligase.
  
     0.732
argA
N-Ac-Glu-synth: amino-acid N-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily.
     
  0.720
sdhD
Succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein.
  
     0.691
LO55_2385
Phasin: phasin family domain protein.
  
     0.686
LO55_2044
Hypothetical protein.
  
     0.682
LO55_934
Hypothetical protein.
  
     0.637
LO55_4343
Hypothetical protein.
  
     0.622
LO55_2975
Hypothetical protein.
  
     0.621
LO55_1896
Zinc-finger domain protein.
  
     0.590
sdhC
succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit.
  
     0.574
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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