Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_933GMC oxidoreductase family protein. (509 aa)    
Predicted Functional Partners:
LO55_3697
Gluconate 2-dehydrogenase subunit 3 family protein.
 
 0.875
LO55_3870
Cytochrome c family protein.
 
 
 0.781
LO55_3699
Cytochrome c family protein.
 
 
 0.759
LO55_4798
Cytochrome c family protein.
 
 
 0.743
LO55_2012
2Fe-2S iron-sulfur cluster binding domain protein.
    
 0.716
LO55_3328
2Fe-2S iron-sulfur cluster binding domain protein.
    
 0.716
LO55_3861
Ankyrin repeat family protein.
    
 0.712
LO55_4230
Ankyrin repeat family protein.
    
 0.712
sldA
Glycerol dehydrogenase large subunit.
     
 0.699
fba
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
  
  
  0.697
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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