Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LO55_944Hypothetical protein. (416 aa)    
Predicted Functional Partners:
LO55_941
Glycosyl Hydrolase Family 88 family protein.
     0.964
LO55_942
Beta-galactosidase family protein.
 
     0.871
LO55_3677
Hypothetical protein.
 
     0.765
LO55_3812
Hypothetical protein.
 
     0.757
LO55_3678
Glycosyl hydrolases 43 family protein.
  
     0.749
LO55_940
Hypothetical protein.
  
     0.728
LO55_3676
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.719
LO55_4954
Glycosyl hydrolases 43 family protein; Belongs to the glycosyl hydrolase 43 family.
  
     0.717
LO55_4213
Hypothetical protein; Glycosyl hydrolase family 65, N-terminal domain protein.
  
     0.711
LO55_184
alpha-L-arabinofuranosidase family protein.
 
     0.710
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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