STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_956Hypothetical protein. (207 aa)    
Predicted Functional Partners:
LO55_4541
Hemerythrin HHE cation binding domain protein.
  
    0.908
pulA
Alpha-1,6-glucosidase; Pullulanase-type domain protein; pullul_strch: alpha-1,6-glucosidases, pullulanase-type domain protein; Belongs to the glycosyl hydrolase 13 family.
   
  
 0.779
LO55_3452
Hypothetical protein.
 
    0.643
LO55_4312
Iron-containing redox enzyme family protein.
   
    0.639
LO55_4171
Polyketide cyclase / dehydrase and lipid transport family protein.
  
    0.633
LO55_3942
Glycosyl transferases group 1 family protein.
  
     0.622
LO55_2128
Putative osmotically inducible lipoprotein B.
 
    0.537
LO55_3639
His Kinase A domain protein.
  
     0.523
LO55_3464
HAMP domain protein.
  
     0.518
LO55_4286
Hypothetical protein.
 
    0.502
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.