Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_960Hypothetical protein. (209 aa)    
Predicted Functional Partners:
LO55_3224
Bacterial conjugation TrbI-like family protein.
  
 
   0.682
LO55_2816
pspC domain protein.
 
  
 0.605
LO55_239
Pentapeptide repeats family protein.
    
   0.576
LO55_3422
Putative lipoprotein.
    
   0.576
LO55_621
Ion channel family protein.
    
   0.576
LO55_3799
Hypothetical protein.
    
   0.567
LO55_4680
lysM domain protein.
    
   0.567
LO55_1850
Hypothetical protein.
 
     0.558
LO55_959
Methyltransferase small domain protein.
       0.503
LO55_636
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    0.492
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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