Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_962Bacterial regulatory, arsR family protein. (106 aa)    
Predicted Functional Partners:
LO55_961
Hypothetical protein.
       0.682
arsH
resist_ArsH: arsenical resistance protein ArsH.
 
   
 0.493
LO55_4742
Low molecular weight phosphotyrosine phosphatase family protein.
 
  
 0.484
LO55_963
cyd_oper_ybgT: cyd operon protein YbgT.
       0.479
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
       0.442
LO55_965
Bacterial Cytochrome Ubiquinol Oxidase family protein.
       0.442
arsC
arsC: arsenate reductase.
 
   
 0.433
arsB
Arsenite/antimonite efflux pump membrane family protein; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.
  
  
 0.411
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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