STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_962Bacterial regulatory, arsR family protein. (106 aa)    
Predicted Functional Partners:
LO55_961
Hypothetical protein.
     
 0.685
arsH
resist_ArsH: arsenical resistance protein ArsH.
 
   
 0.498
LO55_4742
Low molecular weight phosphotyrosine phosphatase family protein.
 
  
 0.490
LO55_963
cyd_oper_ybgT: cyd operon protein YbgT.
       0.479
arsC
arsC: arsenate reductase.
 
   
 0.442
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
       0.442
LO55_965
Bacterial Cytochrome Ubiquinol Oxidase family protein.
       0.442
LO55_2894
AAA domain protein.
   
 
  0.437
arsB
Arsenite/antimonite efflux pump membrane family protein; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.
  
  
 0.425
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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