Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_963cyd_oper_ybgT: cyd operon protein YbgT. (53 aa)    
Predicted Functional Partners:
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
 0.993
LO55_965
Bacterial Cytochrome Ubiquinol Oxidase family protein.
 
 0.992
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
  
 0.942
cydD
cydD: thiol reductant ABC exporter, CydD subunit.
 
  
 0.933
LO55_3413
Bacterial Cytochrome Ubiquinol Oxidase family protein.
  
 0.930
LO55_966
ABC transporter family protein.
 
  
 0.930
sdhC
succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit.
  
  
  0.558
LO55_969
marR family protein.
 
     0.505
sdhA
sdhA_forward: succinate dehydrogenase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
  0.500
LO55_2780
dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur family protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
  0.500
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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