STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_963cyd_oper_ybgT: cyd operon protein YbgT. (53 aa)    
Predicted Functional Partners:
LO55_965
Bacterial Cytochrome Ubiquinol Oxidase family protein.
 
 
 0.991
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
 
 0.990
cydD
cydD: thiol reductant ABC exporter, CydD subunit.
 
  
 0.931
LO55_966
ABC transporter family protein.
 
  
 0.929
LO55_3413
Bacterial Cytochrome Ubiquinol Oxidase family protein.
  
 
 0.926
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
  
 
 0.915
sdhC
succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit.
  
  
  0.558
LO55_969
marR family protein.
 
     0.505
sdhA
sdhA_forward: succinate dehydrogenase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
  0.499
LO55_2780
dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur family protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
  0.499
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.