Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cydB-2cydB: cytochrome d ubiquinol oxidase, subunit II. (385 aa)    
Predicted Functional Partners:
LO55_965
Bacterial Cytochrome Ubiquinol Oxidase family protein.
 0.999
LO55_3413
Bacterial Cytochrome Ubiquinol Oxidase family protein.
 0.998
LO55_963
cyd_oper_ybgT: cyd operon protein YbgT.
 
 0.993
cydD
cydD: thiol reductant ABC exporter, CydD subunit.
 
  
 0.989
LO55_966
ABC transporter family protein.
 
  
 0.986
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
  
  
 
0.636
cyoD
cyoD: cytochrome o ubiquinol oxidase subunit IV.
     
 0.630
sdhC
succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit.
     
 0.601
sdhA
sdhA_forward: succinate dehydrogenase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
 0.601
LO55_2780
dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur family protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
 0.601
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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