Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_965Bacterial Cytochrome Ubiquinol Oxidase family protein. (536 aa)    
Predicted Functional Partners:
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
 0.999
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
 0.997
LO55_963
cyd_oper_ybgT: cyd operon protein YbgT.
 
 0.992
cydD
cydD: thiol reductant ABC exporter, CydD subunit.
 
  
 0.986
LO55_966
ABC transporter family protein.
 
  
 0.980
cyoD
cyoD: cytochrome o ubiquinol oxidase subunit IV.
     
 0.630
LO55_3413
Bacterial Cytochrome Ubiquinol Oxidase family protein.
  
  
 
0.617
LO55_968
Hypothetical protein.
       0.527
LO55_1255
Hypothetical protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 0.514
LO55_969
marR family protein.
  
  
 0.497
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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