STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_966ABC transporter family protein. (558 aa)    
Predicted Functional Partners:
cydD
cydD: thiol reductant ABC exporter, CydD subunit.
 
 
0.996
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
  
 0.991
LO55_965
Bacterial Cytochrome Ubiquinol Oxidase family protein.
 
  
 0.984
LO55_963
cyd_oper_ybgT: cyd operon protein YbgT.
 
  
 0.929
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
  
 0.924
LO55_3413
Bacterial Cytochrome Ubiquinol Oxidase family protein.
 
  
 0.874
LO55_2286
ABC transporter family protein.
 
   
 
0.840
LO55_2174
Hypothetical protein.
    
  0.640
LO55_968
Hypothetical protein.
       0.608
LO55_969
marR family protein.
 
     0.522
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.