STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900070355_01359Unannotated protein. (513 aa)    
Predicted Functional Partners:
GCA_900070355_01358
Unannotated protein.
 0.999
GCA_900070355_00176
Unannotated protein.
     
 0.897
GCA_900070355_01712
Unannotated protein.
     
 0.781
GCA_900070355_00987
Unannotated protein.
    
 0.779
GCA_900070355_00654
Unannotated protein.
     
 0.776
GCA_900070355_01357
Unannotated protein.
       0.714
GCA_900070355_00475
Unannotated protein.
     
 0.702
GCA_900070355_01360
Unannotated protein.
       0.543
GCA_900070355_02187
Unannotated protein.
   
    0.519
GCA_900070355_00283
Unannotated protein.
 
  
 
0.489
Your Current Organism:
Devriesea agamarum
NCBI taxonomy Id: 472569
Other names: CCUG 55056, D. agamarum, Devriesea agamarum Martel et al. 2008, JCM 16028, LMG 24257, LMG:24257, strain IMP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.