STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900070355_02519Unannotated protein. (530 aa)    
Predicted Functional Partners:
GCA_900070355_02520
Unannotated protein.
       0.821
GCA_900070355_02518
Unannotated protein.
       0.808
GCA_900070355_02485
Unannotated protein.
 
  
 0.757
GCA_900070355_00856
Unannotated protein.
    
   0.736
GCA_900070355_02521
Unannotated protein.
 
    0.727
GCA_900070355_02517
Unannotated protein.
     
 0.687
GCA_900070355_00442
Unannotated protein.
  
  
 0.570
GCA_900070355_02516
Unannotated protein.
       0.460
GCA_900070355_00610
Unannotated protein.
 
   
 0.441
GCA_900070355_02526
Unannotated protein.
 
   
0.439
Your Current Organism:
Devriesea agamarum
NCBI taxonomy Id: 472569
Other names: CCUG 55056, D. agamarum, Devriesea agamarum Martel et al. 2008, JCM 16028, LMG 24257, LMG:24257, strain IMP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.