STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000612605_00043Unannotated protein. (523 aa)    
Predicted Functional Partners:
GCA_000612605_00041
Unannotated protein.
 
 
  0.990
GCA_000612605_00040
Unannotated protein.
 
   
 0.873
GCA_000612605_03874
Unannotated protein.
  
  
 0.846
GCA_000612605_00042
Unannotated protein.
       0.788
GCA_000612605_01556
Unannotated protein.
   
 
 0.760
GCA_000612605_03248
Unannotated protein.
  
  
 
0.751
GCA_000612605_02685
Unannotated protein.
    
 0.740
GCA_000612605_03311
Unannotated protein.
     
 0.738
GCA_000612605_02430
Unannotated protein.
  
  
 0.728
GCA_000612605_02533
Unannotated protein.
    
  0.704
Your Current Organism:
Pantoea septica
NCBI taxonomy Id: 472695
Other names: CDC 3123-70, LMG 5345, LMG:5345, P. septica, Pantoea septica Brady et al. 2010, Pantoea sp. LMG 24526, Pantoea sp. LMG 24527, Pantoea sp. LMG 24528, Pantoea sp. LMG 5345, Pantoea sp. R-35488, Pantoea sp. R-35489, Pantoea sp. R-35490, strain BD 874
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.