STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000612605_01486Unannotated protein. (344 aa)    
Predicted Functional Partners:
GCA_000612605_03874
Unannotated protein.
    
 
 0.861
GCA_000612605_02389
Unannotated protein.
  
     0.773
GCA_000612605_03087
Unannotated protein.
  
     0.771
GCA_000612605_03601
Unannotated protein.
  
     0.771
GCA_000612605_02753
Unannotated protein.
  
     0.769
GCA_000612605_04080
Unannotated protein.
  
     0.671
GCA_000612605_01488
Unannotated protein.
 
    
0.668
GCA_000612605_00377
Unannotated protein.
    
 0.661
GCA_000612605_01485
Unannotated protein.
 
     0.613
GCA_000612605_01484
Unannotated protein.
 
     0.503
Your Current Organism:
Pantoea septica
NCBI taxonomy Id: 472695
Other names: CDC 3123-70, LMG 5345, LMG:5345, P. septica, Pantoea septica Brady et al. 2010, Pantoea sp. LMG 24526, Pantoea sp. LMG 24527, Pantoea sp. LMG 24528, Pantoea sp. LMG 5345, Pantoea sp. R-35488, Pantoea sp. R-35489, Pantoea sp. R-35490, strain BD 874
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.