Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001743465_00082 | HA41_16195 | GCA_001743465_00082 | GCA_001743465_00083 | Unannotated protein. | Unannotated protein. | 0.440 |
GCA_001743465_04117 | HA41_02455 | GCA_001743465_04117 | GCA_001743465_00392 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_001743465_04117 | HA41_08700 | GCA_001743465_04117 | GCA_001743465_00061 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_001743465_04117 | HA41_13410 | GCA_001743465_04117 | GCA_001743465_03051 | Unannotated protein. | Unannotated protein. | 0.998 |
GCA_001743465_04117 | HA41_16195 | GCA_001743465_04117 | GCA_001743465_00083 | Unannotated protein. | Unannotated protein. | 0.423 |
GCA_001743465_04117 | rcsC | GCA_001743465_04117 | GCA_001743465_04644 | Unannotated protein. | Unannotated protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. | 0.999 |
GCA_001743465_04117 | rssB | GCA_001743465_04117 | GCA_001743465_02923 | Unannotated protein. | Unannotated protein; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.998 |
HA41_02455 | GCA_001743465_04117 | GCA_001743465_00392 | GCA_001743465_04117 | Unannotated protein. | Unannotated protein. | 0.999 |
HA41_02455 | HA41_08700 | GCA_001743465_00392 | GCA_001743465_00061 | Unannotated protein. | Unannotated protein. | 0.999 |
HA41_02455 | HA41_13410 | GCA_001743465_00392 | GCA_001743465_03051 | Unannotated protein. | Unannotated protein. | 0.970 |
HA41_02455 | HA41_16195 | GCA_001743465_00392 | GCA_001743465_00083 | Unannotated protein. | Unannotated protein. | 0.436 |
HA41_02455 | rcsC | GCA_001743465_00392 | GCA_001743465_04644 | Unannotated protein. | Unannotated protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. | 0.999 |
HA41_02455 | rssB | GCA_001743465_00392 | GCA_001743465_02923 | Unannotated protein. | Unannotated protein; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.986 |
HA41_08700 | GCA_001743465_04117 | GCA_001743465_00061 | GCA_001743465_04117 | Unannotated protein. | Unannotated protein. | 0.999 |
HA41_08700 | HA41_02455 | GCA_001743465_00061 | GCA_001743465_00392 | Unannotated protein. | Unannotated protein. | 0.999 |
HA41_08700 | HA41_13410 | GCA_001743465_00061 | GCA_001743465_03051 | Unannotated protein. | Unannotated protein. | 0.879 |
HA41_08700 | HA41_16195 | GCA_001743465_00061 | GCA_001743465_00083 | Unannotated protein. | Unannotated protein. | 0.405 |
HA41_08700 | rcsC | GCA_001743465_00061 | GCA_001743465_04644 | Unannotated protein. | Unannotated protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. | 0.981 |
HA41_08700 | rssB | GCA_001743465_00061 | GCA_001743465_02923 | Unannotated protein. | Unannotated protein; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.726 |
HA41_13410 | GCA_001743465_04117 | GCA_001743465_03051 | GCA_001743465_04117 | Unannotated protein. | Unannotated protein. | 0.998 |
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