STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA41_06830Unannotated protein. (270 aa)    
Predicted Functional Partners:
HA41_04340
Unannotated protein; Belongs to the inositol monophosphatase superfamily.
  
  
 
0.961
iolG
Unannotated protein; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
    
 0.952
GCA_001743465_03320
Unannotated protein.
    
 0.872
nusG
Unannotated protein; Participates in transcription elongation, termination and antitermination. In the absence of Rho, increases the rate of transcription elongation by the RNA polymerase (RNAP), probably by partially suppressing pausing. In the presence of Rho, modulates most Rho-dependent termination events by interacting with the RNAP to render the complex more susceptible to the termination activity of Rho. May be required to overcome a kinetic limitation of Rho to function at certain terminators. Also involved in ribosomal RNA transcriptional antitermination; Belongs to the NusG family.
   
 
 0.854
hisB
Unannotated protein; In the N-terminal section; belongs to the histidinol- phosphatase family.
  
 
 0.848
nusA
Unannotated protein; Participates in both transcription termination and antitermination.
   
   0.831
HA41_06825
Unannotated protein.
 
     0.823
rpoZ
Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.817
GCA_001743465_03171
Unannotated protein.
    
   0.816
rpoB
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.816
Your Current Organism:
Pantoea conspicua
NCBI taxonomy Id: 472705
Other names: CDC 3527-71, DSM 24241, LMG 24534, LMG:24534, P. conspicua, Pantoea conspicua Brady et al. 2010, Pantoea sp. LMG 24534, Pantoea sp. R-35496, strain BD 805
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