Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HA41_01705 | HA41_07785 | GCA_001743465_00538 | GCA_001743465_00832 | Unannotated protein. | Unannotated protein; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo. | 0.960 |
HA41_01705 | iscS | GCA_001743465_00538 | GCA_001743465_03827 | Unannotated protein. | Unannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.589 |
HA41_01705 | nfuA | GCA_001743465_00538 | GCA_001743465_01934 | Unannotated protein. | Unannotated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.649 |
HA41_02275 | HA41_07785 | GCA_001743465_00428 | GCA_001743465_00832 | Unannotated protein. | Unannotated protein; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo. | 0.880 |
HA41_07765 | HA41_07770 | GCA_001743465_00828 | GCA_001743465_00829 | Unannotated protein; Belongs to the HesB/IscA family. | Unannotated protein. | 0.986 |
HA41_07765 | HA41_07775 | GCA_001743465_00828 | GCA_001743465_00830 | Unannotated protein; Belongs to the HesB/IscA family. | Unannotated protein. | 0.938 |
HA41_07765 | HA41_07780 | GCA_001743465_00828 | GCA_001743465_00831 | Unannotated protein; Belongs to the HesB/IscA family. | Unannotated protein. | 0.916 |
HA41_07765 | HA41_07785 | GCA_001743465_00828 | GCA_001743465_00832 | Unannotated protein; Belongs to the HesB/IscA family. | Unannotated protein; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo. | 0.832 |
HA41_07765 | HA41_07790 | GCA_001743465_00828 | GCA_001743465_00833 | Unannotated protein; Belongs to the HesB/IscA family. | Unannotated protein. | 0.667 |
HA41_07765 | iscS | GCA_001743465_00828 | GCA_001743465_03827 | Unannotated protein; Belongs to the HesB/IscA family. | Unannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.958 |
HA41_07765 | nfuA | GCA_001743465_00828 | GCA_001743465_01934 | Unannotated protein; Belongs to the HesB/IscA family. | Unannotated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.730 |
HA41_07770 | HA41_07765 | GCA_001743465_00829 | GCA_001743465_00828 | Unannotated protein. | Unannotated protein; Belongs to the HesB/IscA family. | 0.986 |
HA41_07770 | HA41_07775 | GCA_001743465_00829 | GCA_001743465_00830 | Unannotated protein. | Unannotated protein. | 0.999 |
HA41_07770 | HA41_07780 | GCA_001743465_00829 | GCA_001743465_00831 | Unannotated protein. | Unannotated protein. | 0.999 |
HA41_07770 | HA41_07785 | GCA_001743465_00829 | GCA_001743465_00832 | Unannotated protein. | Unannotated protein; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo. | 0.992 |
HA41_07770 | HA41_07790 | GCA_001743465_00829 | GCA_001743465_00833 | Unannotated protein. | Unannotated protein. | 0.950 |
HA41_07770 | HA41_10755 | GCA_001743465_00829 | GCA_001743465_04389 | Unannotated protein. | Unannotated protein. | 0.865 |
HA41_07770 | iscS | GCA_001743465_00829 | GCA_001743465_03827 | Unannotated protein. | Unannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.655 |
HA41_07770 | nfuA | GCA_001743465_00829 | GCA_001743465_01934 | Unannotated protein. | Unannotated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.724 |
HA41_07775 | HA41_07765 | GCA_001743465_00830 | GCA_001743465_00828 | Unannotated protein. | Unannotated protein; Belongs to the HesB/IscA family. | 0.938 |
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