STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA41_06385Unannotated protein. (184 aa)    
Predicted Functional Partners:
HA41_00990
Unannotated protein.
   
 
  0.852
HA41_08060
Unannotated protein.
 
 0.812
HA41_06390
Unannotated protein.
 
     0.758
argA
Unannotated protein; Belongs to the acetyltransferase family. ArgA subfamily.
    
  0.689
HA41_12285
Unannotated protein.
  
 
 0.682
cobB
Unannotated protein; Belongs to the sirtuin family. Class III subfamily.
  
 
  0.628
HA41_06380
Unannotated protein.
  
 
 0.617
HA41_08375
Unannotated protein; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 0.564
HA41_06375
Unannotated protein.
       0.562
GCA_001743465_03704
Unannotated protein.
  
  
 0.561
Your Current Organism:
Pantoea conspicua
NCBI taxonomy Id: 472705
Other names: CDC 3527-71, DSM 24241, LMG 24534, LMG:24534, P. conspicua, Pantoea conspicua Brady et al. 2010, Pantoea sp. LMG 24534, Pantoea sp. R-35496, strain BD 805
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.