STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001743465_02411Unannotated protein. (329 aa)    
Predicted Functional Partners:
GCA_001743465_02403
Unannotated protein.
 
 
  0.921
GCA_001743465_02404
Unannotated protein.
 
 
 0.891
ssuC
Unannotated protein.
 
 
 0.848
GCA_001743465_02412
Unannotated protein.
 
     0.828
GCA_001743465_02402
Unannotated protein.
 
     0.791
GCA_001743465_02413
Unannotated protein.
 
     0.786
HA41_06545
Unannotated protein.
  
 
  0.784
GCA_001743465_02677
Unannotated protein.
 
 
  0.742
HA41_18110
Unannotated protein.
 
 
  0.738
GCA_001743465_01715
Unannotated protein.
 
 
  0.693
Your Current Organism:
Pantoea conspicua
NCBI taxonomy Id: 472705
Other names: CDC 3527-71, DSM 24241, LMG 24534, LMG:24534, P. conspicua, Pantoea conspicua Brady et al. 2010, Pantoea sp. LMG 24534, Pantoea sp. R-35496, strain BD 805
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.