STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA41_14510Unannotated protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (356 aa)    
Predicted Functional Partners:
dadA
Unannotated protein; Oxidative deamination of D-amino acids.
  
 
 0.990
murF
Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 0.977
ddl-2
Unannotated protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.974
ddl
Unannotated protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.972
HA41_04090
Unannotated protein.
    
 0.955
HA41_12795
Unannotated protein.
  
 
 0.924
HA41_00170
Unannotated protein.
  
 
 0.924
entF
Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family.
    
 0.861
nadD
Unannotated protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
 
  
 0.851
GCA_001743465_04783
Unannotated protein.
  
 
 0.824
Your Current Organism:
Pantoea conspicua
NCBI taxonomy Id: 472705
Other names: CDC 3527-71, DSM 24241, LMG 24534, LMG:24534, P. conspicua, Pantoea conspicua Brady et al. 2010, Pantoea sp. LMG 24534, Pantoea sp. R-35496, strain BD 805
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.