STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HA41_12975Unannotated protein. (155 aa)    
Predicted Functional Partners:
HA41_12970
Unannotated protein; Belongs to the acetyltransferase family. YpeA subfamily.
  
    0.928
dnaG
Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
   
    0.821
HA41_12980
Unannotated protein.
 
     0.774
HA41_12800
Unannotated protein.
  
     0.765
HA41_05070
Unannotated protein.
  
     0.740
HA41_07610
Unannotated protein.
  
     0.738
HA41_12940
Unannotated protein.
  
     0.704
HA41_02590
Unannotated protein.
  
     0.682
HA41_12755
Unannotated protein.
  
    0.678
rlmE
Unannotated protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
   
    0.676
Your Current Organism:
Pantoea conspicua
NCBI taxonomy Id: 472705
Other names: CDC 3527-71, DSM 24241, LMG 24534, LMG:24534, P. conspicua, Pantoea conspicua Brady et al. 2010, Pantoea sp. LMG 24534, Pantoea sp. R-35496, strain BD 805
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.