Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001743465_01812 | HA41_06785 | GCA_001743465_01812 | GCA_001743465_00105 | Unannotated protein. | Unannotated protein. | 0.491 |
GCA_001743465_01812 | HA41_10580 | GCA_001743465_01812 | GCA_001743465_03413 | Unannotated protein. | Unannotated protein. | 0.815 |
GCA_001743465_01812 | recA | GCA_001743465_01812 | GCA_001743465_04448 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.469 |
GCA_001743465_01812 | recB | GCA_001743465_01812 | GCA_001743465_04382 | Unannotated protein. | Unannotated protein; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme [...] | 0.964 |
GCA_001743465_01812 | recC | GCA_001743465_01812 | GCA_001743465_04380 | Unannotated protein. | Unannotated protein; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme [...] | 0.957 |
GCA_001743465_02115 | HA41_06785 | GCA_001743465_02115 | GCA_001743465_00105 | Unannotated protein. | Unannotated protein. | 0.491 |
GCA_001743465_02115 | HA41_10580 | GCA_001743465_02115 | GCA_001743465_03413 | Unannotated protein. | Unannotated protein. | 0.815 |
GCA_001743465_02115 | recA | GCA_001743465_02115 | GCA_001743465_04448 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.466 |
GCA_001743465_02115 | recB | GCA_001743465_02115 | GCA_001743465_04382 | Unannotated protein. | Unannotated protein; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme [...] | 0.958 |
GCA_001743465_02115 | recC | GCA_001743465_02115 | GCA_001743465_04380 | Unannotated protein. | Unannotated protein; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme [...] | 0.945 |
GCA_001743465_04383 | HA41_06785 | GCA_001743465_04383 | GCA_001743465_00105 | Unannotated protein. | Unannotated protein. | 0.586 |
GCA_001743465_04383 | HA41_10550 | GCA_001743465_04383 | GCA_001743465_03419 | Unannotated protein. | Unannotated protein. | 0.406 |
GCA_001743465_04383 | HA41_10580 | GCA_001743465_04383 | GCA_001743465_03413 | Unannotated protein. | Unannotated protein. | 0.816 |
GCA_001743465_04383 | HA41_11410 | GCA_001743465_04383 | GCA_001743465_04381 | Unannotated protein. | Unannotated protein; Belongs to the peptidase M16 family. | 0.819 |
GCA_001743465_04383 | recA | GCA_001743465_04383 | GCA_001743465_04448 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.478 |
GCA_001743465_04383 | recB | GCA_001743465_04383 | GCA_001743465_04382 | Unannotated protein. | Unannotated protein; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme [...] | 0.999 |
GCA_001743465_04383 | recC | GCA_001743465_04383 | GCA_001743465_04380 | Unannotated protein. | Unannotated protein; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme [...] | 0.997 |
HA41_06785 | GCA_001743465_01812 | GCA_001743465_00105 | GCA_001743465_01812 | Unannotated protein. | Unannotated protein. | 0.491 |
HA41_06785 | GCA_001743465_02115 | GCA_001743465_00105 | GCA_001743465_02115 | Unannotated protein. | Unannotated protein. | 0.491 |
HA41_06785 | GCA_001743465_04383 | GCA_001743465_00105 | GCA_001743465_04383 | Unannotated protein. | Unannotated protein. | 0.586 |
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