STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001743465_04572Unannotated protein. (487 aa)    
Predicted Functional Partners:
HA41_05090
Unannotated protein.
 
 
 0.993
GCA_001743465_01233
Unannotated protein.
 
 
 0.989
uxaC
Unannotated protein.
 
 
 0.983
HA41_10450
Unannotated protein.
    
 0.972
HA41_10455
Unannotated protein.
 
  
 0.956
HA41_16120
Unannotated protein.
  
 
 0.936
GCA_001743465_04605
Unannotated protein.
  
 
 0.889
HA41_10435
Unannotated protein.
   
 0.882
HA41_10105
Unannotated protein.
 
 0.815
garD
Unannotated protein; Catalyzes the dehydration of galactarate to form 5-dehydro-4- deoxy-D-glucarate.
 
 
 0.739
Your Current Organism:
Pantoea conspicua
NCBI taxonomy Id: 472705
Other names: CDC 3527-71, DSM 24241, LMG 24534, LMG:24534, P. conspicua, Pantoea conspicua Brady et al. 2010, Pantoea sp. LMG 24534, Pantoea sp. R-35496, strain BD 805
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.