Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001743465_03123 | GCA_001743465_04111 | GCA_001743465_03123 | GCA_001743465_04111 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_001743465_03123 | hflX | GCA_001743465_03123 | GCA_001743465_04788 | Unannotated protein. | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.946 |
GCA_001743465_03123 | rplI | GCA_001743465_03123 | GCA_001743465_04804 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA. | 0.997 |
GCA_001743465_03123 | rplK | GCA_001743465_03123 | GCA_001743465_03176 | Unannotated protein. | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
GCA_001743465_03123 | rplS | GCA_001743465_03123 | GCA_001743465_04466 | Unannotated protein. | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.997 |
GCA_001743465_03123 | rplT | GCA_001743465_03123 | GCA_001743465_00811 | Unannotated protein. | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
GCA_001743465_03123 | rplU | GCA_001743465_03123 | GCA_001743465_04139 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
GCA_001743465_03123 | rplV | GCA_001743465_03123 | GCA_001743465_03118 | Unannotated protein. | Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
GCA_001743465_03123 | rplX | GCA_001743465_03123 | GCA_001743465_03110 | Unannotated protein. | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
GCA_001743465_03123 | rpmF | GCA_001743465_03123 | GCA_001743465_00708 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL32 family. | 0.994 |
GCA_001743465_04111 | GCA_001743465_03123 | GCA_001743465_04111 | GCA_001743465_03123 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_001743465_04111 | hflX | GCA_001743465_04111 | GCA_001743465_04788 | Unannotated protein. | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.945 |
GCA_001743465_04111 | rplI | GCA_001743465_04111 | GCA_001743465_04804 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA. | 0.997 |
GCA_001743465_04111 | rplK | GCA_001743465_04111 | GCA_001743465_03176 | Unannotated protein. | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.998 |
GCA_001743465_04111 | rplS | GCA_001743465_04111 | GCA_001743465_04466 | Unannotated protein. | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.997 |
GCA_001743465_04111 | rplT | GCA_001743465_04111 | GCA_001743465_00811 | Unannotated protein. | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
GCA_001743465_04111 | rplU | GCA_001743465_04111 | GCA_001743465_04139 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
GCA_001743465_04111 | rplV | GCA_001743465_04111 | GCA_001743465_03118 | Unannotated protein. | Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
GCA_001743465_04111 | rplX | GCA_001743465_04111 | GCA_001743465_03110 | Unannotated protein. | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
GCA_001743465_04111 | rpmF | GCA_001743465_04111 | GCA_001743465_00708 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL32 family. | 0.997 |
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