Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001743465_03123 | GCA_001743465_04111 | GCA_001743465_03123 | GCA_001743465_04111 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_001743465_03123 | engB | GCA_001743465_03123 | GCA_001743465_01623 | Unannotated protein. | Unannotated protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.919 |
GCA_001743465_03123 | mnmE | GCA_001743465_03123 | GCA_001743465_03508 | Unannotated protein. | Unannotated protein; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.886 |
GCA_001743465_03123 | rlmB | GCA_001743465_03123 | GCA_001743465_04795 | Unannotated protein. | Unannotated protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. RlmB subfamily. | 0.888 |
GCA_001743465_03123 | rnr | GCA_001743465_03123 | GCA_001743465_04794 | Unannotated protein. | Unannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. Belongs to the RNR ribonuclease family. RNase R subfamily. | 0.706 |
GCA_001743465_03123 | rplK | GCA_001743465_03123 | GCA_001743465_03176 | Unannotated protein. | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
GCA_001743465_03123 | rplO | GCA_001743465_03123 | GCA_001743465_03102 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
GCA_001743465_03123 | rplU | GCA_001743465_03123 | GCA_001743465_04139 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
GCA_001743465_03123 | rplX | GCA_001743465_03123 | GCA_001743465_03110 | Unannotated protein. | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
GCA_001743465_03123 | rsfS | GCA_001743465_03123 | GCA_001743465_00315 | Unannotated protein. | Unannotated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.953 |
GCA_001743465_04111 | GCA_001743465_03123 | GCA_001743465_04111 | GCA_001743465_03123 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_001743465_04111 | engB | GCA_001743465_04111 | GCA_001743465_01623 | Unannotated protein. | Unannotated protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.916 |
GCA_001743465_04111 | mnmE | GCA_001743465_04111 | GCA_001743465_03508 | Unannotated protein. | Unannotated protein; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.925 |
GCA_001743465_04111 | rlmB | GCA_001743465_04111 | GCA_001743465_04795 | Unannotated protein. | Unannotated protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. RlmB subfamily. | 0.889 |
GCA_001743465_04111 | rnr | GCA_001743465_04111 | GCA_001743465_04794 | Unannotated protein. | Unannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. Belongs to the RNR ribonuclease family. RNase R subfamily. | 0.654 |
GCA_001743465_04111 | rplK | GCA_001743465_04111 | GCA_001743465_03176 | Unannotated protein. | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.998 |
GCA_001743465_04111 | rplO | GCA_001743465_04111 | GCA_001743465_03102 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
GCA_001743465_04111 | rplU | GCA_001743465_04111 | GCA_001743465_04139 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
GCA_001743465_04111 | rplX | GCA_001743465_04111 | GCA_001743465_03110 | Unannotated protein. | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
GCA_001743465_04111 | rsfS | GCA_001743465_04111 | GCA_001743465_00315 | Unannotated protein. | Unannotated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.959 |
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