Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_0366KEGG: noc:Noc_2985 hypothetical protein. (207 aa)    
Predicted Functional Partners:
Nhal_0367
KEGG: noc:Noc_2984 hypothetical protein.
 
     0.950
Nhal_1348
KEGG: noc:Noc_1791 hypothetical protein.
  
     0.707
Nhal_3468
KEGG: noc:Noc_2830 hypothetical protein.
  
     0.655
Nhal_0368
Hypothetical protein.
       0.551
Nhal_0365
PAS sensor protein; KEGG: noc:Noc_2986 PAS domain-containing protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS domain containing protein.
       0.496
Nhal_1546
KEGG: noc:Noc_0550 hypothetical protein.
  
     0.480
Nhal_0363
PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: noc:Noc_2988 lytic transglycosylase.
 
     0.459
Nhal_3104
KEGG: noc:Noc_1678 hypothetical protein.
  
     0.455
Nhal_3234
KEGG: noc:Noc_1974 hypothetical protein.
  
     0.455
Nhal_0364
KEGG: noc:Noc_2987 hypothetical protein.
 
     0.431
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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