STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_0469PFAM: protein of unknown function DUF140; KEGG: aeh:Mlg_1205 hypothetical protein. (380 aa)    
Predicted Functional Partners:
Nhal_0468
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_0099 ABC transporter, ATP-binding protein.
 
 0.999
Nhal_0467
PFAM: Mammalian cell entry related domain protein; KEGG: cbg:CbuG_1274 hypothetical protein.
 
 0.998
Nhal_0341
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: noc:Noc_2786 ABC transporter, ATPase subunit.
 
 0.994
Nhal_0343
PFAM: Mammalian cell entry related domain protein; KEGG: noc:Noc_2784 ABC-type transport system involved in resistance to organic solvents periplasmic component.
 
 0.981
Nhal_0466
PFAM: protein of unknown function DUF330; KEGG: ank:AnaeK_0375 ABC-type uncharacterized transport system auxiliary component-like protein.
 
    0.949
Nhal_0342
PFAM: protein of unknown function DUF140; KEGG: noc:Noc_2785 hypothetical protein.
  
  
 
0.920
Nhal_0345
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: noc:Noc_2783 sulfate transporter/antisigma-factor antagonist STAS.
 
 0.893
Nhal_0344
PFAM: toluene tolerance family protein; KEGG: noc:Noc_2782 toluene tolerance protein.
  
 
 0.843
Nhal_0347
PFAM: toluene tolerance family protein; KEGG: noc:Noc_2782 toluene tolerance protein.
  
 
 0.843
Nhal_0769
PFAM: toluene tolerance family protein; KEGG: noc:Noc_2096 toluene tolerance protein.
  
 
 0.843
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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