STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_0641PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat; KEGG: noc:Noc_2532 OmpA/MotB. (301 aa)    
Predicted Functional Partners:
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.832
Nhal_2461
PFAM: outer membrane chaperone Skp (OmpH); KEGG: noc:Noc_0817 outer membrane chaperone Skp (OmpH); Belongs to the skp family.
  
 
 0.576
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
 
 0.557
Nhal_2657
PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_0834 flagellar motor protein MotB.
  
 
 0.553
Nhal_3234
KEGG: noc:Noc_1974 hypothetical protein.
 
 
 0.550
cpoB
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
  
 0.508
Nhal_1546
KEGG: noc:Noc_0550 hypothetical protein.
 
 
 0.495
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.492
rpmI
TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: noc:Noc_1142 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
   0.489
Nhal_0640
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: noc:Noc_2533 multi anti extrusion protein MatE.
  
    0.488
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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