Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Nhal_1007PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dvm:DvMF_1635 transcriptional regulator, XRE family. (110 aa)    
Predicted Functional Partners:
Nhal_1008
KEGG: bav:BAV1312A phage protein.
 
   
 0.946
Nhal_0771
KEGG: cja:CJA_1213 hypothetical protein.
  
 
 0.861
Nhal_1014
KEGG: mca:MCA2676 hypothetical protein.
 
     0.647
Nhal_1009
KEGG: mca:MCA2671 hypothetical protein.
 
     0.615
Nhal_1015
KEGG: aav:Aave_4092 hypothetical protein.
  
    0.558
Nhal_1010
KEGG: dia:Dtpsy_3195 hypothetical protein.
       0.555
Nhal_1011
KEGG: mca:MCA2673 hypothetical protein.
       0.555
Nhal_1012
KEGG: rso:RSc0877 hypothetical protein.
       0.555
Nhal_1013
KEGG: mca:MCA2675 hypothetical protein.
       0.555
Nhal_3262
KEGG: bvi:Bcep1808_3249 hypothetical protein.
  
     0.483
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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