Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Nhal_1027PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_0452 hypothetical protein. (71 aa)    
Predicted Functional Partners:
Nhal_1028
PFAM: YcfA family protein; KEGG: mpo:Mpop_3128 YcfA family protein.
 
 
   0.960
Nhal_0117
PFAM: YcfA family protein; KEGG: aeh:Mlg_2273 YcfA family protein.
 
 
   0.839
Nhal_0625
PFAM: YcfA family protein; KEGG: sme:SMc04441 hypothetical protein.
 
 
   0.703
Nhal_3637
PFAM: protein of unknown function UPF0150; KEGG: hpa:HPAG1_0204 hypothetical protein.
  
     0.611
Nhal_2047
PFAM: protein of unknown function UPF0150; KEGG: ppd:Ppro_1149 hypothetical protein.
  
     0.562
Nhal_0941
PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_2242 hypothetical protein.
  
     0.548
Nhal_2048
PFAM: YcfA family protein; KEGG: rpb:RPB_4579 YcfA-like.
 
 
   0.533
Nhal_0624
PFAM: protein of unknown function UPF0150; CopG domain protein DNA-binding domain protein; KEGG: noc:Noc_2537 hypothetical protein.
  
     0.465
Nhal_2505
Hypothetical protein.
 
 
   0.460
Nhal_1029
KEGG: rle:RL1102 hypothetical protein.
       0.439
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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