STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_1188PFAM: protein of unknown function DUF125 transmembrane; KEGG: sfr:Sfri_2292 protein of unknown function DUF125, transmembrane. (194 aa)    
Predicted Functional Partners:
Nhal_1187
PFAM: protein of unknown function DUF211; KEGG: sfr:Sfri_2293 protein of unknown function DUF211.
 
     0.917
Nhal_0978
KEGG: eba:ebA7287 hypothetical protein.
  
     0.685
Nhal_1014
KEGG: mca:MCA2676 hypothetical protein.
  
     0.654
Nhal_0963
KEGG: eba:ebA7287 hypothetical protein.
  
     0.651
Nhal_0431
KEGG: dat:HRM2_15520 putative selenocysteine protein.
  
     0.642
Nhal_1189
KEGG: noc:Noc_2130 cation transporting ATPase, E1-E2 type; TIGRFAM: calcium-translocating P-type ATPase, PMCA-type; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM.
   
   0.624
Nhal_1006
KEGG: son:SO_0680 hypothetical protein.
 
     0.579
Nhal_1723
Hypothetical protein; KEGG: asu:Asuc_0397 peptidoglycan binding domain-containing protein.
  
     0.579
Nhal_1005
KEGG: dac:Daci_3443 hypothetical protein.
  
     0.553
Nhal_1009
KEGG: mca:MCA2671 hypothetical protein.
  
     0.524
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.