Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_1964KEGG: noc:Noc_1017 hypothetical protein. (897 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.849
Nhal_3890
PFAM: Fimbrial assembly family protein; KEGG: noc:Noc_0248 type 4 fimbrial biogenesis protein PilN.
  
  
 0.769
Nhal_0597
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: noc:Noc_0722 signal transduction histidine kinase.
  
 
   0.764
Nhal_3891
TIGRFAM: type IV pilus assembly protein PilM; KEGG: noc:Noc_0247 type IV pilus assembly protein PilM.
  
  
 0.763
Nhal_3124
PFAM: type IV pilus assembly PilZ; KEGG: noc:Noc_1658 type IV pilus assembly PilZ.
  
     0.754
Nhal_3888
PFAM: Pilus assembly protein PilP; KEGG: noc:Noc_0250 pilus assembly protein, PilQ.
  
  
 0.751
Nhal_3800
KEGG: noc:Noc_2996 hypothetical protein.
  
     0.745
Nhal_3889
PFAM: Pilus assembly protein PilO; KEGG: noc:Noc_0249 pilus assembly protein, PilO.
  
  
 0.743
Nhal_3815
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: noc:Noc_3013 peptidoglycan-binding LysM.
  
   
 0.736
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
  
 0.733
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.