STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_2000PFAM: transposase IS4 family protein; KEGG: aby:ABAYE3624 IS4 family transposase. (381 aa)    
Predicted Functional Partners:
mutH
DNA mismatch repair endonuclease mutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family.
  
     0.611
Nhal_0552
KEGG: noc:Noc_2650 hypothetical protein.
  
     0.458
Nhal_1999
TIGRFAM: conserved hypothetical protein; PFAM: Selenoprotein W-related; KEGG: noc:Noc_1092 SelT/SelW/SelH selenoprotein.
       0.435
Nhal_1542
Hypothetical protein; KEGG: mca:MCA2498 cysteine-rich repeat-containing protein.
  
     0.418
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.