Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Nhal_2004PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cvi:CV_2697 TldD protein family. (476 aa)    
Predicted Functional Partners:
Nhal_2005
KEGG: tgr:Tgr7_2559 hypothetical protein.
 
    0.960
Nhal_0258
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: tgr:Tgr7_2264 microcin-processing peptidase 1.
 
 
 0.926
Nhal_2006
KEGG: noc:Noc_1356 hypothetical protein.
       0.645
Nhal_2007
PFAM: protein of unknown function DUF399; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: noc:Noc_1357 hypothetical protein.
       0.581
Nhal_2003
PFAM: protein of unknown function DUF819; KEGG: pla:Plav_0567 hypothetical protein.
       0.546
Nhal_0093
KEGG: noc:Noc_2911 hypothetical protein.
  
     0.428
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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