Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Nhal_2011PFAM: protein of unknown function UPF0153; KEGG: noc:Noc_1358 hypothetical protein; Belongs to the UPF0260 family. (147 aa)    
Predicted Functional Partners:
Nhal_2010
Hypothetical protein.
       0.506
Nhal_2008
KEGG: afw:Anae109_0557 hypothetical protein.
       0.439
Nhal_2009
PFAM: peptidase M48 Ste24p; KEGG: afw:Anae109_0556 peptidase M48 Ste24p.
       0.439
Nhal_0573
TIGRFAM: lytic murein transglycosylase B; KEGG: noc:Noc_2634 lytic murein transglycosylase B.
 
     0.415
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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