STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nhal_2016TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: noc:Noc_1361 pilus retraction protein PilT. (390 aa)    
Predicted Functional Partners:
Nhal_3849
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.814
Nhal_3848
PFAM: type II secretion system protein; KEGG: noc:Noc_0311 type II secretion system protein F.
 
   
 0.808
Nhal_0440
PFAM: type II secretion system protein; KEGG: noc:Noc_2894 general secretion pathway protein F.
 
   
 0.804
Nhal_3891
TIGRFAM: type IV pilus assembly protein PilM; KEGG: noc:Noc_0247 type IV pilus assembly protein PilM.
  
  
 0.796
Nhal_3887
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: noc:Noc_0251 fimbrial assembly protein PilQ precursor.
  
  
 0.638
Nhal_0906
KEGG: noc:Noc_2275 general secretion pathway protein H.
  
   
 0.559
Nhal_2017
PFAM: Auxin Efflux Carrier; KEGG: noc:Noc_1362 auxin efflux carrier.
       0.535
Nhal_3889
PFAM: Pilus assembly protein PilO; KEGG: noc:Noc_0249 pilus assembly protein, PilO.
 
  
 0.535
Nhal_3890
PFAM: Fimbrial assembly family protein; KEGG: noc:Noc_0248 type 4 fimbrial biogenesis protein PilN.
  
  
 0.510
Nhal_3888
PFAM: Pilus assembly protein PilP; KEGG: noc:Noc_0250 pilus assembly protein, PilQ.
  
   
 0.458
Your Current Organism:
Nitrosococcus halophilus
NCBI taxonomy Id: 472759
Other names: N. halophilus Nc 4, Nitrosococcus halophilus Nc 4, Nitrosococcus halophilus str. Nc 4, Nitrosococcus halophilus strain Nc 4
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